Line is represented by a separate text file with name equal to theĬorresponding MAGIC line (eg MAGIC.100).
Download the package magic_src_v4.0.tar.gz.Mapping then there is no need to download the SNP calls. We provide the raw SNP calls used to impute the genomes along with Genomes are mosaics of a set of known founders. Of wider utility than just Arabidopsis MAGIC lines: the imputationĬode will work on any population (not necessarily inbred) whose Perform association mapping on the imputed genomes. We have written two linked programs in C, reconstruction to inferīreakpoints from low-coverage sequence data,Īnd and to impute the genomes of the MAGIC lines, and genome_scan to These genomes are described in our paper Multiple reference genomesĪnd transcriptomes for Arabidopsis thaliana Nature 2011. Genome sequences of the 19 founders of the MAGIC population. These genome sequences can now be used for association analysis in the Mosaics can be mapped at high precisions, usually to within 1kb. Inferred by a dynamic programming algorithm, akin to the Viterbi pathįrom a hidden Markov model. In order to obtain about 500k SNPs for each line.
We have now resequenced almost 500 of these lines at low coverage
To date over 700 lines haveħ03 these lines were originally genotyped at 1260 SNPs, and theĭata and R analysis software for QTL mapping using the original data PloS Genetics paper we genotyped the lines at 1200 SNPs spaced about Multiparent Advanced Generation Inter-Cross to Fine-Map QuantitativeĮach MAGIC genome is a mosaic of the 19 founder genomes. Recombinant inbred line of Arabidopsis thaliana, with aįocus on data and software to perform genetic association. This page contains resources relating to the MAGIC population of It is the best choice for the real enjoyment and magical fun.Imputation and Association Analysis in Arabidopsis thaliana MAGIC Even though the quest does not have a high RTP, but still, it is better than other low RTP amusements. Here are some of the popular gambling options by this provider. Bounteous Gamesīetsoft is one of the leading game software providers, and it offers an unlimited number of games. This time, your success to do this will award you with a double payout. In this round, a player has to press the stop button when the lights are illuminated on the repeater symbol. You will be redirected to the next level. It will light up both arrows and start/stop button at the same time. Now, you have to hit the Start/Stop button. There is also a set of arrows beside this circuit, which is pointing upwards. The slot is unique because of this feature, as this arrow circuit indicates the repeater feature for this amusement. There is a circuit of arrows right above the grid. There is a Double stake button, a button to adjust the win lines, and a start-stop button. There are also 3 buttons at the bottom of the screen. These symbols are grapes, cherries, pears, blueberries, oranges, and lemons. On the right side of this grid is the paytable which shows the corresponding values for landing three matching symbols. The Magic Lines amusement takes after the stylish system of antiquated pokies from the 80s. The jackpot amount for this quest is 800 coins. So, it is not suitable for big gamblers, but it is still best for newbies. This slot has a considerably low RTP, which is only 92%. The bet amounts range from 0.02 from as a minimum amount to a maximum of 20 coins in size. The Magic Lines slot allows you to place the minimum bet of 1 coin per line and the maximum of 2 coins per line.